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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23255344_23256125_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23255344 - 23256125
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAACTGTA
5'SS Class:
major
3'SS Sequence:
GTTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTGCAAGTAAAT
Flanking Amino Acid:
EFLTDGYQDLGAILNNLLPN
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
74.2
36.5
Major BPS
73.9
0.59
1
81
30.2
Major PPT
86.7
0.83
0.7
85.5
29.2
Minor 5ss
42
-0.9
3.2
54.9
44.7
Minor BPS
42.2
-0.5
2.3
65.26
44.3

Associated Gene:

Gene:
PTPRZ1
Ensembl Gene ID:
ENSAPLG00000015904
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016617
23209445 - 23346496
137052
ENSAPLT00000037641
23209445 - 23346496
137052
ENSAPLT00000029434
23209445 - 23346496
137052
ENSAPLT00000025932
23209445 - 23346496
137052
ENSAPLT00000024915
23209445 - 23346496
137052
ENSAPLT00000045597
23209445 - 23346496
137052