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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23265360_23269787_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23265360 - 23269787
Intron Length:
4428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTGTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTCTAT
U12 Branch Point Sequence:
TTTTCCTCTATC
Flanking Amino Acid:
DTFIRNTGKTVEINLTNDHY
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
49.5
-0
1.3
50.1
43.7
Major PPT
84.4
0.77
0.8
83.9
31.1
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
64.3
0.43
1.9
79.1
36.4

Associated Gene:

Gene:
PTPRZ1
Ensembl Gene ID:
ENSAPLG00000015904
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025932
23209445 - 23346496
137052
ENSAPLT00000024915
23209445 - 23346496
137052
ENSAPLT00000045597
23209445 - 23346496
137052
ENSAPLT00000016617
23209445 - 23346496
137052
ENSAPLT00000037641
23209445 - 23346496
137052
ENSAPLT00000029434
23209445 - 23346496
137052