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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23269968_23307743_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23269968 - 23307743
Intron Length:
37776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGATTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAAGTTTTAAAT
Flanking Amino Acid:
LIEEIDWSYTGTLNQKNWGK
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.1
0.72
0.8
74.4
40.4
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
58.1
0.33
1.5
70.66
40.2

Associated Gene:

Gene:
PTPRZ1
Ensembl Gene ID:
ENSAPLG00000015904
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029434
23209445 - 23346496
137052
ENSAPLT00000025932
23209445 - 23346496
137052
ENSAPLT00000024915
23209445 - 23346496
137052
ENSAPLT00000045597
23209445 - 23346496
137052
ENSAPLT00000016617
23209445 - 23346496
137052
ENSAPLT00000037641
23209445 - 23346496
137052