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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23341700_23346438_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23341700 - 23346438
Intron Length:
4739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
ATCCACTAAATT
Flanking Amino Acid:
CIQLVCILRVGGCKRNLAPA
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.8
40.2
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
82.2
0.72
0.9
82.8
32.6
Minor 5ss
27.1
-2.6
2.9
24.3
36.8
Minor BPS
49.9
0.07
1.8
68.68
42.3

Associated Gene:

Gene:
PTPRZ1
Ensembl Gene ID:
ENSAPLG00000015904
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025932
23209445 - 23346496
137052