Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23346806_23349110_F

Intron Information:

Intron Rank:

144046

Intron Class:

major

Intron Phase:

Intron Coordinates:

23346806 - 23349110

Intron Length:

2305

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGCGTGCG

5'SS Class:

major

3'SS Sequence:

TTTTCATCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

ACTTTCTGAGCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.4

0.48

1.1

56.9

42.5

Major BPS

100

1.24

0.5

100

Major PPT

87.2

0.84

0.7

28.6

Minor 5ss

-2.8

3.1

23.5

37.1

Minor BPS

55.1

0.16

1.7

66.28

40.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027651

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042064

23346517 - 23354104

7588