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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23349197_23353555_F

Intron Information:

Intron Rank:
144047
Intron Class:
major
Intron Phase:
Intron Coordinates:
23349197 - 23353555
Intron Length:
4359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTCTTCTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.9
0.81
0.8
80.3
30.2
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
60.4
0.32
1.6
67.16
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042064
23346517 - 23354104
7588