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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2341151_2342911_F

Intron Information:

Intron Rank:
140963
Intron Class:
major
Intron Phase:
Intron Coordinates:
2341151 - 2342911
Intron Length:
1761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCAATTC
5'SS Class:
major
3'SS Sequence:
TTCTATGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TGCTTATGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1
65.5
35
Major BPS
75.5
0.63
1
66
40.9
Major PPT
82.9
0.74
0.9
80.5
36.8
Minor 5ss
35.3
-1.7
3.4
50
46.5
Minor BPS
48.7
-0
1.8
68.03
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025906
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044067
2340743 - 2343034
2292