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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23420370_23420669_R

Intron Information:

Intron Rank:
148084
Intron Class:
major
Intron Phase:
Intron Coordinates:
23420370 - 23420669
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATATCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTTTATTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.1
0.68
0.9
73.9
35.8
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
50.9
0.11
1.9
73.87
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026965
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033959
23418854 - 23421176
2323