About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23420370_23421902_R

Intron Information:

Intron Rank:
148085
Intron Class:
major
Intron Phase:
Intron Coordinates:
23420370 - 23421902
Intron Length:
1533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATATCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTTTATTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
82.4
30.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.1
0.68
0.9
73.9
35.8
Minor 5ss
58.1
0.27
2.3
76
39.6
Minor BPS
50.9
0.11
1.9
73.87
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026965
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044653
23419447 - 23422111
2665