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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23546540_23552193_F

Intron Information:

Intron Rank:
141544
Intron Class:
major
Intron Phase:
Intron Coordinates:
23546540 - 23552193
Intron Length:
5654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
CTTTTTGCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATCAT
U12 Branch Point Sequence:
AGAAAAGTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
79
35.3
Major BPS
73
0.57
1.2
74
41.2
Major PPT
80.8
0.69
0.8
75.9
32.8
Minor 5ss
39.9
-1.1
3.4
54.7
43.6
Minor BPS
41.7
-0.5
2.3
59.73
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026228
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041002
23545934 - 23552801
6868