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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23571986_23574535_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23571986 - 23574535
Intron Length:
2550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
CACTTCTGAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTTTAAAA
Flanking Amino Acid:
MRIAGAAKLVVVVA
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
61.5
0.26
1
58
37
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
72.4
0.7
1.2
78.49
31.1

Associated Gene:

Gene:
FAM3C
Ensembl Gene ID:
ENSAPLG00000016245
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016959
23571926 - 23586820
14895