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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23575770_23575955_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23575770 - 23575955
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTGAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTCTCTAAAA
Flanking Amino Acid:
ARSALDAAARSTKPPRYKCG
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
80.3
34.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
73.9
0.54
1.1
78.1
34.2
Minor 5ss
39.1
-1.2
3.1
61.3
43
Minor BPS
67
0.53
1.7
81.52
33.2

Associated Gene:

Gene:
FAM3C
Ensembl Gene ID:
ENSAPLG00000016245
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016959
23571926 - 23586820
14895