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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23581306_23582648_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23581306 - 23582648
Intron Length:
1343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTAAAC
Flanking Amino Acid:
GRGINVALVNGKTGEPLDTK
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
93.1
0.97
0.6
92.3
18
Minor 5ss
34.5
-1.8
3.3
45.9
43.7
Minor BPS
69.7
0.6
1.7
79.92
33.9

Associated Gene:

Gene:
FAM3C
Ensembl Gene ID:
ENSAPLG00000016245
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016959
23571926 - 23586820
14895