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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23582700_23583151_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23582700 - 23583151
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TGGTGCTTATGT
Flanking Amino Acid:
DTKFFDMWGGDVAPFIEFLK
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
85.4
0.8
0.8
77
37.2
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
47.4
-0.1
2.3
68.18
48.3

Associated Gene:

Gene:
FAM3C
Ensembl Gene ID:
ENSAPLG00000016245
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016959
23571926 - 23586820
14895