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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23585452_23586499_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23585452 - 23586499
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTTAT
5'SS Class:
major
3'SS Sequence:
TTTCTATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTCACATTAACA
Flanking Amino Acid:
GIKTKSPFEQHIKNNKDTNK
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.3
76.7
34.9
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
89.7
0.89
0.7
84.3
29.4
Minor 5ss
43.4
-0.7
2.6
58.3
46.3
Minor BPS
68.5
0.58
1.6
77.58
38.9

Associated Gene:

Gene:
FAM3C
Ensembl Gene ID:
ENSAPLG00000016245
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016959
23571926 - 23586820
14895