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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23597312_23605626_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23597312 - 23605626
Intron Length:
8315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CATTTGCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCAAAT
U12 Branch Point Sequence:
ATGTTCTCCATT
Flanking Amino Acid:
NRHNNEAGRQAVAKLMSVDC
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
81.4
30.7
Major BPS
64.7
0.37
1.1
69.5
34.1
Major PPT
80.9
0.69
0.9
77.2
36.7
Minor 5ss
43.3
-0.7
3.1
60.6
44.5
Minor BPS
49
0
1.9
69.77
41.9

Associated Gene:

Gene:
WNT16
Ensembl Gene ID:
ENSAPLG00000030369
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024143
23596128 - 23608485
12358