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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23607894_23607986_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23607894 - 23607986
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
GTTGATCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTGAT
U12 Branch Point Sequence:
CCGTGGCTAACC
Flanking Amino Acid:
LCPGAAGGTWTWLGIAASGG
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
72.2
39.5
Major BPS
63.5
0.33
1.4
57.1
49.4
Major PPT
69.7
0.44
0.9
62.5
39.4
Minor 5ss
32
-2.1
2.7
36
33.5
Minor BPS
40.1
-0.7
2.5
50.12
46.8

Associated Gene:

Gene:
WNT16
Ensembl Gene ID:
ENSAPLG00000030369
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024143
23596128 - 23608485
12358