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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23633042_23635014_R

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
23633042 - 23635014
Intron Length:
1973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTGGAACACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATCTGGAACA
Flanking Amino Acid:
PVDGIHSLSQAEVQNLWNEN
Intron Amino Acid Position:
935

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.2
30.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
58.7
0.2
1
50.8
41.4
Minor 5ss
43.2
-0.8
2.9
55.3
48.9
Minor BPS
54.6
0.14
2.1
73.02
38.8

Associated Gene:

Gene:
CPED1
Ensembl Gene ID:
ENSAPLG00000000584
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017083
23628591 - 23772611
144021
ENSAPLT00000000864
23626999 - 23772611
145613
ENSAPLT00000028891
23626999 - 23772611
145613
ENSAPLT00000024397
23626999 - 23772611
145613