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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23635103_23635313_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23635103 - 23635313
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGCCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTCATTTAATT
Flanking Amino Acid:
HLQIIQKVLNRENLSNILVI
Intron Amino Acid Position:
905

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
77.6
33
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
65.7
0.35
1
60.1
40.2
Minor 5ss
40.4
-1.1
3.3
55.8
48.3
Minor BPS
66.7
0.6
1.4
80.91
34.4

Associated Gene:

Gene:
CPED1
Ensembl Gene ID:
ENSAPLG00000000584
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017083
23628591 - 23772611
144021
ENSAPLT00000000864
23626999 - 23772611
145613
ENSAPLT00000028891
23626999 - 23772611
145613
ENSAPLT00000024397
23626999 - 23772611
145613