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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23635416_23635676_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23635416 - 23635676
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGTAT
5'SS Class:
major
3'SS Sequence:
TTCTGGGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
TTTAAGGCAACA
Flanking Amino Acid:
FEKALEQLLQRSRPLENTDQ
Intron Amino Acid Position:
871

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
68.7
38.6
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
76.3
0.59
1
72.5
42.4
Minor 5ss
37.4
-1.4
3.5
55.6
48.6
Minor BPS
39.4
-0.8
2.7
61.43
44.2

Associated Gene:

Gene:
CPED1
Ensembl Gene ID:
ENSAPLG00000000584
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017083
23628591 - 23772611
144021
ENSAPLT00000000864
23626999 - 23772611
145613
ENSAPLT00000028891
23626999 - 23772611
145613
ENSAPLT00000024397
23626999 - 23772611
145613