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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23703137_23704440_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23703137 - 23704440
Intron Length:
1304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAATCA
5'SS Class:
major
3'SS Sequence:
TCTCTCTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TAGTCCCTAATC
Flanking Amino Acid:
ELKNIGQFELLFPSAAPKIQ
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
66.4
33.2
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
85.3
0.79
0.7
83.9
24.1
Minor 5ss
37.7
-1.4
3.1
45.3
44.6
Minor BPS
65.3
0.46
1.7
72.44
38.6

Associated Gene:

Gene:
CPED1
Ensembl Gene ID:
ENSAPLG00000000584
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017083
23628591 - 23772611
144021
ENSAPLT00000000864
23626999 - 23772611
145613
ENSAPLT00000028891
23626999 - 23772611
145613
ENSAPLT00000024397
23626999 - 23772611
145613