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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23704546_23705569_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23704546 - 23705569
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTTCAT
5'SS Class:
major
3'SS Sequence:
CTTTCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GTGATTTCAACA
Flanking Amino Acid:
ENVYGLTVSKDGIYHKEDEQ
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
70.7
41.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
86.3
0.82
0.7
81
24.1
Minor 5ss
34.6
-1.8
3.3
49.6
46.6
Minor BPS
51.5
0.04
1.6
60.58
39.5

Associated Gene:

Gene:
CPED1
Ensembl Gene ID:
ENSAPLG00000000584
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017083
23628591 - 23772611
144021
ENSAPLT00000000864
23626999 - 23772611
145613
ENSAPLT00000028891
23626999 - 23772611
145613
ENSAPLT00000024397
23626999 - 23772611
145613