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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23737677_23760644_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23737677 - 23760644
Intron Length:
22968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGAATA
5'SS Class:
major
3'SS Sequence:
TCATTCCTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTCTTTTCATT
Flanking Amino Acid:
EDLRHEGPYHNDISPWDLLI
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
74.9
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
68.8
0.42
1
65.5
36
Minor 5ss
39.2
-1.2
3.1
55.2
42.8
Minor BPS
52.9
0.17
1.7
71.97
40.1

Associated Gene:

Gene:
CPED1
Ensembl Gene ID:
ENSAPLG00000000584
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017083
23628591 - 23772611
144021
ENSAPLT00000000864
23626999 - 23772611
145613
ENSAPLT00000030238
23736660 - 23772611
35952
ENSAPLT00000028891
23626999 - 23772611
145613
ENSAPLT00000024397
23626999 - 23772611
145613