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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23760832_23771098_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23760832 - 23771098
Intron Length:
10267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTACTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TATCTTATGACC
Flanking Amino Acid:
PVSDTQAVRKIEDSILQYFG
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.8
77.9
38.6
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
79.2
0.66
0.8
75.1
34.6
Minor 5ss
33.6
-1.9
2.9
40.4
45.7
Minor BPS
50.8
0.01
1.6
64.55
34.5

Associated Gene:

Gene:
CPED1
Ensembl Gene ID:
ENSAPLG00000000584
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017083
23628591 - 23772611
144021
ENSAPLT00000000864
23626999 - 23772611
145613
ENSAPLT00000030238
23736660 - 23772611
35952
ENSAPLT00000028891
23626999 - 23772611
145613
ENSAPLT00000024397
23626999 - 23772611
145613