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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23793957_23795102_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23793957 - 23795102
Intron Length:
1146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTTTT
5'SS Class:
major
3'SS Sequence:
TTCTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
GAATTCAAATTA
Flanking Amino Acid:
NTDSRSGRKSKNNNKSSSQQ
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
81.6
33.2
Major BPS
77.3
0.68
1
81.5
27
Major PPT
94.1
0.99
0.6
87.9
29.5
Minor 5ss
46.5
-0.4
3.1
66.5
39
Minor BPS
40.2
-0.7
1.9
46.63
36.7

Associated Gene:

Gene:
ING3
Ensembl Gene ID:
ENSAPLG00000002016
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002247
23791571 - 23806918
15348