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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23797069_23797363_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23797069 - 23797363
Intron Length:
295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTGTTCTACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
TTGCTTTTAAGT
Flanking Amino Acid:
HHAHSHTPVEKRKHNPSSHH
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
80.7
33.7
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
74.4
0.55
0.9
74.4
35.5
Minor 5ss
37.5
-1.4
3
47.9
41.8
Minor BPS
61.3
0.43
1.6
76.33
40.8

Associated Gene:

Gene:
ING3
Ensembl Gene ID:
ENSAPLG00000002016
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002247
23791571 - 23806918
15348