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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23800076_23801262_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
23800076 - 23801262
Intron Length:
1187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCAAAAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTGTCTCAAAA
Flanking Amino Acid:
VQLANQIYDLVDRHLRKLDQ
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
58.5
0.19
1.1
52.5
39.8
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
58.2
0.25
1.7
72.5
39.4

Associated Gene:

Gene:
ING3
Ensembl Gene ID:
ENSAPLG00000002016
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002247
23791571 - 23806918
15348