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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23806712_23806890_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23806712 - 23806890
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
CGTGTGCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCCC
U12 Branch Point Sequence:
CCCTCCTCCCCC
Flanking Amino Acid:
MLYLEDYLEMIEQLPMDLR
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1
60.3
39.3
Major BPS
28.7
-1.3
4.1
59.2
39.1
Major PPT
65.7
0.35
1
57.9
38.5
Minor 5ss
28.9
-2.4
3.1
31
36.6
Minor BPS
34.9
-1.2
3.6
49.59
47.1

Associated Gene:

Gene:
ING3
Ensembl Gene ID:
ENSAPLG00000002016
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002247
23791571 - 23806918
15348