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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23845240_23845604_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23845240 - 23845604
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGATGTC
5'SS Class:
major
3'SS Sequence:
CTTTTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGATAAATAACT
Flanking Amino Acid:
MISYEQLMSVSVLGVS
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
69
36.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
89.3
0.88
0.6
88.7
20.6
Minor 5ss
29.8
-2.3
3.5
42.4
45.1
Minor BPS
49.3
0.03
2
73.77
41.7

Associated Gene:

Gene:
TSPAN12
Ensembl Gene ID:
ENSAPLG00000002596
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028157
23845157 - 23877490
32334