Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2400862_2401357_R

Intron Information:

Intron Rank:

130316

Intron Class:

major

Intron Phase:

Intron Coordinates:

2400862 - 2401357

Intron Length:

496

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTCTG

5'SS Class:

strong_major

3'SS Sequence:

ACTTCATCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTCAT

U12 Branch Point Sequence:

GCAACTTCATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.95

0.8

77.8

38.7

Major BPS

78.6

0.71

79.6

32.9

Major PPT

77.3

0.62

0.9

70.5

34.5

Minor 5ss

32.4

-2

40.4

45.7

Minor BPS

45.9

-0.2

1.8

58.61

44.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017329

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022549

2397078 - 2401679

4602