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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2404556_2417448_F

Intron Information:

Intron Rank:
133861
Intron Class:
major
Intron Phase:
Intron Coordinates:
2404556 - 2417448
Intron Length:
12893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCCAT
U12 Branch Point Sequence:
AGCTGCGTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
36.2
Major BPS
62.2
0.3
1.4
72.5
43.5
Major PPT
81.7
0.71
0.8
78.4
34.7
Minor 5ss
30.7
-2.2
3.2
38
46.8
Minor BPS
44.9
-0.3
2.4
64.14
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021972
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047104
2394398 - 2418223
23826