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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24249061_24256846_R

Intron Information:

Intron Rank:
155607
Intron Class:
major
Intron Phase:
Intron Coordinates:
24249061 - 24256846
Intron Length:
7786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTAGTCTT
5'SS Class:
major
3'SS Sequence:
CTTTTTTAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCTTTTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
75.6
39.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76.8
0.6
0.9
78.8
33.4
Minor 5ss
36.7
-1.5
3
49.2
40.8
Minor BPS
78.6
0.98
1
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031230
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047658
24248180 - 24256997
8818