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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24249061_24257879_R

Intron Information:

Intron Rank:
155605
Intron Class:
major
Intron Phase:
Intron Coordinates:
24249061 - 24257879
Intron Length:
8819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGAAAA
5'SS Class:
major
3'SS Sequence:
CTTTTTTAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCTTTTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
71.3
33.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76.8
0.6
0.9
78.8
33.4
Minor 5ss
39
-1.2
2.8
45.4
44
Minor BPS
78.6
0.98
1
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031230
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033864
24248946 - 24257960
9015