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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24361450_24406832_R

Intron Information:

Intron Rank:
129771
Intron Class:
major
Intron Phase:
Intron Coordinates:
24361450 - 24406832
Intron Length:
45383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGAGC
5'SS Class:
major
3'SS Sequence:
TTCTTCCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TCTTCCCTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
66.3
39.4
Major BPS
54
0.1
1
59.7
32.6
Major PPT
86.3
0.82
0.7
80.7
24.7
Minor 5ss
26.5
-2.7
3
33.9
41.8
Minor BPS
48.7
-0.2
2.1
61.25
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038853
24360306 - 24407669
47364