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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24370932_24378268_F

Intron Information:

Intron Rank:
135769
Intron Class:
major
Intron Phase:
Intron Coordinates:
24370932 - 24378268
Intron Length:
7337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTAAATTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.9
34.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
87
0.83
0.8
84.8
35.4
Minor 5ss
44.6
-0.6
2.5
57.8
40.7
Minor BPS
51.3
0.12
2.1
79.31
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023104
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033377
24370316 - 24400890
30575