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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24378352_24400554_F

Intron Information:

Intron Rank:
135770
Intron Class:
major
Intron Phase:
Intron Coordinates:
24378352 - 24400554
Intron Length:
22203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTTTTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
76.8
33.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
87.7
0.85
0.7
90
24.6
Minor 5ss
28.2
-2.5
3.1
38.3
46.6
Minor BPS
69.2
0.69
1.5
86.8
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023104
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033377
24370316 - 24400890
30575