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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24445857_24454933_F

Intron Information:

Intron Rank:
128288
Intron Class:
major
Intron Phase:
Intron Coordinates:
24445857 - 24454933
Intron Length:
9077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCTCTTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
88.8
0.87
0.7
83.3
25.1
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
56.8
0.07
1.8
63.96
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019081
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024676
24445175 - 24455274
10100