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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2466181_2467251_R

Intron Information:

Intron Rank:
132169
Intron Class:
major
Intron Phase:
Intron Coordinates:
2466181 - 2467251
Intron Length:
1071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
CTACCCATACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.4
38.7
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
83.7
0.76
0.7
76.3
32.3
Minor 5ss
27.7
-2.6
3
34.2
42
Minor BPS
50.1
0.08
2
71.44
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018369
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031705
2464885 - 2467519
2635