About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2468113_2469281_F

Intron Information:

Intron Rank:
144191
Intron Class:
major
Intron Phase:
Intron Coordinates:
2468113 - 2469281
Intron Length:
1169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
CGCATGTCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCTATTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
81.3
33.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
65.3
0.34
0.9
60.9
40.1
Minor 5ss
42.8
-0.8
3.4
61.3
44.6
Minor BPS
54.4
0.22
1.9
76.08
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027731
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038049
2467657 - 2470103
2447