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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24823679_24825115_R

Intron Information:

Intron Rank:
137352
Intron Class:
major
Intron Phase:
Intron Coordinates:
24823679 - 24825115
Intron Length:
1437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTAATTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TGATTTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
1
88.2
26.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
75.6
0.58
0.9
69.2
40.6
Minor 5ss
33.8
-1.9
2.6
42.8
44.1
Minor BPS
53.3
0.18
2
72.55
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021390
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022385
24820573 - 24825266
4694