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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24860564_24862888_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24860564 - 24862888
Intron Length:
2325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGACTC
5'SS Class:
major
3'SS Sequence:
CTTTTATTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
VITSDGRMIVGTLKGFDQTI
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
0.9
67.7
37.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82
0.72
0.7
81.4
29.4
Minor 5ss
31.2
-2.1
3.2
39.7
40.1
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
LSM8
Ensembl Gene ID:
ENSAPLG00000005115
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005283
24860483 - 24865404
4922