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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24891548_24892252_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24891548 - 24892252
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTAA
5'SS Class:
major
3'SS Sequence:
TCTGCATTATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATTGCATTATCT
Flanking Amino Acid:
KLQEVNLFLQTQAASQDRLE
Intron Amino Acid Position:
1621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
75.3
29.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
72.7
0.51
1
70.7
38.8
Minor 5ss
45
-0.5
2.6
57.6
47.1
Minor BPS
57.3
0.31
2
79.65
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004753
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042442
24879758 - 24928030
48273
ENSAPLT00000023301
24880600 - 24928030
47431
ENSAPLT00000022133
24880600 - 24930625
50026
ENSAPLT00000004959
24880600 - 24930625
50026
ENSAPLT00000043135
24880600 - 24933179
52580