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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24895374_24896771_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24895374 - 24896771
Intron Length:
1398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTAA
5'SS Class:
major
3'SS Sequence:
GTTACTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
GTTACTTCCACA
Flanking Amino Acid:
TTAEEYQHEQMQKQNVLPLT
Intron Amino Acid Position:
1397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
71.3
37.1
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
75.3
0.57
0.9
68.8
37.1
Minor 5ss
44
-0.7
2.9
58.2
46.4
Minor BPS
48.7
-0.1
2
65.14
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004753
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042442
24879758 - 24928030
48273
ENSAPLT00000023301
24880600 - 24928030
47431
ENSAPLT00000022133
24880600 - 24930625
50026
ENSAPLT00000004959
24880600 - 24930625
50026
ENSAPLT00000043135
24880600 - 24933179
52580