Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24898456_24898652_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24898456 - 24898652

Intron Length:

197

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAAGA

5'SS Class:

strong_major

3'SS Sequence:

ATTTCTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

ATTTCCATCATA

Flanking Amino Acid:

TIKQLEEHVQRLEIENARLE

Intron Amino Acid Position:

1339

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.8

33.7

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

88.1

0.86

0.7

85.6

28.2

Minor 5ss

32.8

-2

2.9

40.7

45.1

Minor BPS

57.3

0.22

74.71

36.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004753

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022133

24880600 - 24930625

50026

ENSAPLT00000004959

24880600 - 24930625

50026

ENSAPLT00000043135

24880600 - 24933179

52580

ENSAPLT00000042442

24879758 - 24928030

48273

ENSAPLT00000023301

24880600 - 24928030

47431