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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24898829_24899535_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24898829 - 24899535
Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGAAA
5'SS Class:
major
3'SS Sequence:
TGAACTTTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTACTGTGAACT
Flanking Amino Acid:
QKELDKVKTKLQESEQQRIQ
Intron Amino Acid Position:
1281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
69.9
35.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
76.9
0.6
0.9
73.4
41.6
Minor 5ss
37
-1.5
3.2
47.6
48.1
Minor BPS
49.9
0.07
2.2
75.08
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004753
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023301
24880600 - 24928030
47431
ENSAPLT00000022133
24880600 - 24930625
50026
ENSAPLT00000004959
24880600 - 24930625
50026
ENSAPLT00000043135
24880600 - 24933179
52580
ENSAPLT00000042442
24879758 - 24928030
48273