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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24903755_24905302_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24903755 - 24905302
Intron Length:
1548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTAA
5'SS Class:
major
3'SS Sequence:
TATATTACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
TTTTGCTCAAGA
Flanking Amino Acid:
IITLRKLLKQVEEERDETQR
Intron Amino Acid Position:
862

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
75.3
29.9
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
73.3
0.53
0.9
67.8
38.4
Minor 5ss
45
-0.5
2.6
57.6
47.1
Minor BPS
54.8
0.15
2.2
75.44
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004753
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023301
24880600 - 24928030
47431
ENSAPLT00000022133
24880600 - 24930625
50026
ENSAPLT00000004959
24880600 - 24930625
50026
ENSAPLT00000043135
24880600 - 24933179
52580
ENSAPLT00000042442
24879758 - 24928030
48273