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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24905487_24905756_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24905487 - 24905756
Intron Length:
270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTAAATCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TCTCTGTTAAAT
Flanking Amino Acid:
VEWKSDIQSLKFSLKQEEEK
Intron Amino Acid Position:
800

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
82.5
29.7
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
70.3
0.46
1
62.7
41.9
Minor 5ss
45.2
-0.5
2.6
59.7
39.1
Minor BPS
51.8
0.13
2.1
74.05
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004753
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022133
24880600 - 24930625
50026
ENSAPLT00000043135
24880600 - 24933179
52580
ENSAPLT00000004959
24880600 - 24930625
50026
ENSAPLT00000042442
24879758 - 24928030
48273
ENSAPLT00000023301
24880600 - 24928030
47431