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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24905971_24907144_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24905971 - 24907144
Intron Length:
1174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCCAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TATTTCCAAATA
Flanking Amino Acid:
LLEQLGVDHAGSVILLKIQN
Intron Amino Acid Position:
729

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.2
1.16
0.6
97
9.5
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
67.6
0.4
1
64.1
36.7
Minor 5ss
46.1
-0.4
2.8
66.9
44.4
Minor BPS
51.5
0.04
1.9
68.65
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004753
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004959
24880600 - 24930625
50026
ENSAPLT00000043135
24880600 - 24933179
52580
ENSAPLT00000042442
24879758 - 24928030
48273
ENSAPLT00000023301
24880600 - 24928030
47431
ENSAPLT00000022133
24880600 - 24930625
50026