About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24907559_24911915_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24907559 - 24911915
Intron Length:
4357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGAAT
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
ATTCCAGTAATG
Flanking Amino Acid:
TFSETSQDEERPAAKTGSEK
Intron Amino Acid Position:
1030

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
71.7
39.6
Major BPS
67.7
0.44
1
58
38.9
Major PPT
87.7
0.85
0.8
80.2
37.3
Minor 5ss
32.9
-1.9
3.4
48.5
47.3
Minor BPS
47.5
-0.3
2.3
60.57
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004753
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042442
24879758 - 24928030
48273
ENSAPLT00000023301
24880600 - 24928030
47431
ENSAPLT00000022133
24880600 - 24930625
50026
ENSAPLT00000043135
24880600 - 24933179
52580