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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24913108_24916955_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24913108 - 24916955
Intron Length:
3848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
TTTCTTTTCATA
Flanking Amino Acid:
KDTIENYGRQVEKEKRKQRC
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
66.7
0.41
1
57.8
39
Major PPT
86.7
0.82
0.6
83.7
24.6
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
57
0.21
1.7
71.66
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004753
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043135
24880600 - 24933179
52580
ENSAPLT00000042442
24879758 - 24928030
48273
ENSAPLT00000004959
24880600 - 24930625
50026